Transcript: lnc-SLC22A5-6:2

Basic information

LNCipedia transcript ID: lnc-SLC22A5-6:2 
LNCipedia gene ID: lnc-SLC22A5-6
RefSeq ID: NR_045116
Location (hg19): chr5:131746465-131811736
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 805 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_045116; NR_045116.1
Alternative gene names: C5orf56


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.3795 non-coding 
CPAT coding probability 15.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A5-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC22A5-2:1
4.0 lnc-C5orf56-2:1
4.1 lnc-C5orf56-2:1
5.0 lnc-C5orf56-2:1
5.1 lnc-PDLIM4-6:2
5.2 lnc-SLC22A5-6:2