Transcript: lnc-SLC22A5-6:3

Basic information

LNCipedia transcript ID: lnc-SLC22A5-6:3 
LNCipedia gene ID: lnc-SLC22A5-6
Ensembl Gene ID: ENSG00000197536
Ensembl Transcript ID: ENST00000461203
Location (hg19): chr5:131746673-131785683
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 521 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT103750; ENST00000461203.5
Alternative gene names: ENSG00000197536.11; C5orf56


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.0808 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A5-6:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC22A5-2:2
4.0 lnc-C5orf56-2:2
4.1 lnc-C5orf56-2:2
5.0 lnc-C5orf56-2:2
5.1 lnc-PDLIM4-6:4
5.2 lnc-SLC22A5-6:3