Transcript: lnc-SLC24A3-1:1

Basic information

LNCipedia transcript ID: lnc-SLC24A3-1:1 
LNCipedia gene ID: lnc-SLC24A3-1
Ensembl Gene ID: ENSG00000233895
Ensembl Transcript ID: ENST00000432334
Location (hg19): chr20:19738352-19780320
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 287 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027907; ENST00000432334; ENST00000432334.1; RP1-122P22.2-001; OTTHUMT00000078204.1; NONHSAT078876
Alternative gene names: XLOC_013475; linc-RIN2; ENSG00000233895; RP1-122P22.2; ENSG00000233895.1; OTTHUMG00000031992.1; AL121761.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.6836 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC24A3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC24A3-1:1
3.1 lnc-SLC24A3-1:1
4.0 lnc-SLC24A3-1:1
4.1 lnc-SLC24A3-1:1
5.0 lnc-SLC24A3-1:1
5.1 lnc-CFAP61-9:8
5.2 lnc-SLC24A3-1:1