Transcript: lnc-SLC25A16-1:1

Basic information

LNCipedia transcript ID: lnc-SLC25A16-1:1 
LNCipedia gene ID: lnc-SLC25A16-1
Location (hg19): chr10:70237755-70240521
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1780 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000439904; ENST00000439904.1; RP11-9E13.2-001; OTTHUMT00000048332.1
Alternative gene names: ENSG00000234635; RP11-9E13.2; ENSG00000234635.1; OTTHUMG00000018350.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.426 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A16-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A16-1:1
3.1 lnc-SLC25A16-1:1
4.0 lnc-SLC25A16-1:1
4.1 lnc-SLC25A16-1:1
5.0 lnc-SLC25A16-1:1
5.1 lnc-C10orf105-47:1
5.2 lnc-SLC25A16-1:1