Transcript: lnc-SLC25A16-2:1

Basic information

LNCipedia transcript ID: lnc-SLC25A16-2:1 
LNCipedia gene ID: lnc-SLC25A16-2
Location (hg19): chr10:70451421-70452698
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 349 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000416028.1; RP11-119F7.4-001; OTTHUMT00000048353.1; NONHSAT013728
Alternative gene names: ENSG00000228088.1; RP11-119F7.4; OTTHUMG00000018358.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.5714 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A16-2:1 yes no no no

Available literature

  1. Sun (2015), Novel long non-coding RNA RP11-119F7.4 as a potential biomarker for the development and progression of gastric cancer., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC25A16-2:1
4.0 lnc-SLC25A16-2:1
4.1 lnc-SLC25A16-2:1
5.0 lnc-SLC25A16-2:1
5.1 lnc-C10orf105-45:1
5.2 lnc-SLC25A16-2:1