Transcript: lnc-SLC25A27-2:1

Basic information

LNCipedia transcript ID: lnc-SLC25A27-2:1 
LNCipedia gene ID: lnc-SLC25A27-2
Ensembl Gene ID: ENSG00000236466
Ensembl Transcript ID: ENST00000415787
Location (hg19): chr6:46459789-46500495
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 622 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011307; ENST00000415787.1; RP11-795J1.1-001; OTTHUMT00000040785.1
Alternative gene names: XLOC_005306; linc-SLC25A27-2; ENSG00000236466.1; RP11-795J1.1; OTTHUMG00000014783.1; AL359633.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.9222 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A27-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A27-1:1
3.1 lnc-SLC25A27-2:1
4.0 lnc-SLC25A27-2:1
4.1 lnc-SLC25A27-2:1
5.0 lnc-SLC25A27-2:1
5.1 lnc-TREML4-99:3
5.2 lnc-SLC25A27-2:1