Transcript: lnc-SLC25A32-3:1

Basic information

LNCipedia transcript ID: lnc-SLC25A32-3:1 
LNCipedia gene ID: lnc-SLC25A32-3
Ensembl Gene ID: ENSG00000253477
Ensembl Transcript ID: ENST00000523422
Location (hg19): chr8:104495651-104513904
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 449 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523422.1; RP11-1C8.4-002; OTTHUMT00000381497.1; NONHSAT128192
Alternative gene names: ENSG00000253477.1; RP11-1C8.4; OTTHUMG00000165035.1; ENSG00000253477.5; AC012213.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.9753 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A32-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC25A32-3:1
4.0 lnc-SLC25A32-3:1
4.1 lnc-SLC25A32-3:1
5.0 lnc-SLC25A32-3:1
5.1 lnc-ZNF706-80:4
5.2 lnc-SLC25A32-3:1