Transcript: lnc-SLC25A48-3:1

Basic information

LNCipedia transcript ID: lnc-SLC25A48-3:1 
LNCipedia gene ID: lnc-SLC25A48-3
Ensembl Gene ID: ENSG00000250167
Ensembl Transcript ID: ENST00000509372
Location (hg19): chr5:134895267-134970564
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 474 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509372.1; CTC-321K16.1-001; OTTHUMT00000371689.2; NONHSAT103915
Alternative gene names: ENSG00000250167.1; CTC-321K16.1; OTTHUMG00000163105.2; AC034206.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.3297 non-coding 
CPAT coding probability 12.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A48-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC25A48-3:1
4.0 lnc-SLC25A48-3:1
4.1 lnc-SLC25A48-3:1
5.0 lnc-SLC25A48-3:1
5.1 lnc-PDLIM4-79:1
5.2 lnc-SLC25A48-3:1