Transcript: lnc-SLC25A48-3:2

Basic information

LNCipedia transcript ID: lnc-SLC25A48-3:2 
LNCipedia gene ID: lnc-SLC25A48-3
Ensembl Gene ID: ENSG00000250167
Ensembl Transcript ID: ENST00000514446
Location (hg19): chr5:134914875-134970542
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 634 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514446.1; CTC-321K16.1-002; OTTHUMT00000371683.1; NONHSAT103918
Alternative gene names: ENSG00000250167.1; CTC-321K16.1; OTTHUMG00000163105.2; AC034206.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.3297 non-coding 
CPAT coding probability 5.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A48-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC25A48-3:2
4.0 lnc-SLC25A48-3:2
4.1 lnc-SLC25A48-3:2
5.0 lnc-SLC25A48-3:2
5.1 lnc-PDLIM4-79:5
5.2 lnc-SLC25A48-3:2