Transcript: lnc-SLC26A3-1:10

Basic information

LNCipedia transcript ID: lnc-SLC26A3-1:10 
LNCipedia gene ID: lnc-SLC26A3-1
Location (hg19): chr7:107380277-107385026
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4221 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000241764.3|HBMT00001345840.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -19.9931 non-coding 
CPAT coding probability 5.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC26A3-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC26A3-1:10
5.0 lnc-SLC26A3-1:10
5.1 lnc-NRCAM-10:3
5.2 lnc-SLC26A3-1:10