Transcript: lnc-SLC2A1-2:2

Basic information

LNCipedia transcript ID: lnc-SLC2A1-2:2 
LNCipedia gene ID: lnc-SLC2A1-2
Ensembl Gene ID: ENSG00000283973
Ensembl Transcript ID: ENST00000640236
Location (hg19): chr1:43424736-43427462
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 535 bp
Exons: 5
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000640236.1
Alternative gene names: ENSG00000283973.1; AC099795.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -461.3152 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-SLC2A1-2:2
5.1 lnc-SLC2A1-2:2
5.2 lnc-SLC2A1-2:2