Transcript: lnc-SLC2A12-4:1

Basic information

LNCipedia transcript ID: lnc-SLC2A12-4:1 
LNCipedia gene ID: lnc-SLC2A12-4
Ensembl Gene ID: ENSG00000223542
Ensembl Transcript ID: ENST00000412954
Location (hg19): chr6:133756215-133760602
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 631 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412954; ENST00000412954.1; RP1-283K11.3-001; OTTHUMT00000042281.1; NONHSAT114993
Alternative gene names: ENSG00000223542; RP1-283K11.3; ENSG00000223542.1; OTTHUMG00000015601.1; AL024497.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.5189 non-coding 
CPAT coding probability 5.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A12-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC2A12-2:1
3.1 lnc-SLC2A12-4:1
4.0 lnc-SLC2A12-4:1
4.1 lnc-SLC2A12-4:1
5.0 lnc-SLC2A12-4:1
5.1 lnc-OLIG3-78:1
5.2 lnc-SLC2A12-4:1