Transcript: lnc-SLC2A4RG-2:5

Basic information

LNCipedia transcript ID: lnc-SLC2A4RG-2:5 
LNCipedia gene ID: lnc-SLC2A4RG-2
Location (hg19): chr20:62376897-62377309
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 266 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000433905.1; RP4-583P15.10-002; OTTHUMT00000080170.1; NONHSAT080932
Alternative gene names: ENSG00000229299.1; RP4-583P15.10; OTTHUMG00000032989.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.6207 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A4RG-2:5 no no no no

Available literature

  1. Xu (2015), Microarray expression profile analysis of long non-coding RNAs in human breast cancer: a study of Chinese women., Biomed. Pharmacother.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A4RG-1:2
4.0 lnc-SLC2A4RG-2:5
4.1 lnc-SLC2A4RG-2:5
5.0 lnc-SLC2A4RG-2:5
5.1 lnc-GNAS-81:5
5.2 lnc-SLC2A4RG-2:5