Transcript: lnc-SLC2A6-1:1

Basic information

LNCipedia transcript ID: lnc-SLC2A6-1:1 
LNCipedia gene ID: lnc-SLC2A6-1
Location (hg19): chr9:136333982-136335880
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 429 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420546.1; RP13-100B2.4-001; OTTHUMT00000054908.1; NONHSAT135330
Alternative gene names: ENSG00000227898.1; RP13-100B2.4; OTTHUMG00000020873.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC2A6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC2A6-1:1
4.0 lnc-SLC2A6-1:1
4.1 lnc-SLC2A6-1:1
5.0 lnc-SLC2A6-1:1
5.1 lnc-SURF1-10:1
5.2 lnc-SLC2A6-1:1