Transcript: lnc-SLC30A5-1:1

Basic information

LNCipedia transcript ID: lnc-SLC30A5-1:1 
LNCipedia gene ID: lnc-SLC30A5-1
Ensembl Gene ID: ENSG00000250066
Ensembl Transcript ID: ENST00000513197
Location (hg19): chr5:68259073-68263672
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 417 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009414; ENST00000513197; ENST00000513197.1; RP11-141O11.1-001; OTTHUMT00000368582.1; NONHSAT101874
Alternative gene names: XLOC_004417; linc-SLC30A5-1; ENSG00000250066; RP11-141O11.1; ENSG00000250066.1; OTTHUMG00000162333.1; AC093248.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -376.1894 non-coding 
CPAT coding probability 7.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC30A5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A5-1:1
3.1 lnc-SLC30A5-1:1
4.0 lnc-SLC30A5-1:1
4.1 lnc-SLC30A5-1:1
5.0 lnc-SLC30A5-1:1
5.1 lnc-BDP1-39:1
5.2 lnc-SLC30A5-1:1