Transcript: lnc-SLC34A2-1:1

Basic information

LNCipedia transcript ID: lnc-SLC34A2-1:1 
LNCipedia gene ID: lnc-SLC34A2-1
Location (hg19): chr4:25610333-25621087
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00007494; ENST00000515188; ENST00000515188.1; RP11-302F12.3-001; OTTHUMT00000360038.1; NONHSAT095844
Alternative gene names: XLOC_003477; linc-SLC34A2; ENSG00000248545; RP11-302F12.3; ENSG00000248545.1; OTTHUMG00000160281.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -388.9708 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC34A2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC34A2-1:1
3.1 lnc-SLC34A2-1:1
4.0 lnc-SLC34A2-1:1
4.1 lnc-SLC34A2-1:1
5.0 lnc-SLC34A2-1:1
5.1 lnc-USP17L28-106:1
5.2 lnc-SLC34A2-1:1