Transcript: lnc-SLC35C1-5:1

Basic information

LNCipedia transcript ID: lnc-SLC35C1-5:1 
LNCipedia gene ID: lnc-SLC35C1-5
Location (hg19): chr11:45791203-45803753
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 980 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_472_chr11:45791202-45803753_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.5005 non-coding 
CPAT coding probability 4.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2210P24.4.1-5:1
4.0 lnc-CTD-2210P24.4.1-5:1
4.1 lnc-CTD-2210P24.4.1-5:1
5.0 lnc-CTD-2210P24.4.1-5:1
5.1 lnc-OR5L2-80:1
5.2 lnc-SLC35C1-5:1