Transcript: lnc-SLC35C1-8:1

Basic information

LNCipedia transcript ID: lnc-SLC35C1-8:1 
LNCipedia gene ID: lnc-SLC35C1-8
Location (hg19): chr11:45693469-45722570
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9618 bp
Exons: 8
Sources: Nielsen et al.,2014
Alternative transcript names: l_471_chr11:45693468-45701603_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8258 non-coding 
CPAT coding probability 9.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35C1-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTD-2210P24.4.1-8:1
4.0 lnc-CTD-2210P24.4.1-8:1
4.1 lnc-CTD-2210P24.4.1-8:1
5.0 lnc-CTD-2210P24.4.1-8:1
5.1 lnc-OR5L2-84:1
5.2 lnc-SLC35C1-8:1