Transcript: lnc-SLC35D3-1:1

Basic information

LNCipedia transcript ID: lnc-SLC35D3-1:1 
LNCipedia gene ID: lnc-SLC35D3-1
Ensembl Gene ID: ENSG00000235399
Ensembl Transcript ID: ENST00000458017
Location (hg19): chr6:137316307-137320641
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011380; ENST00000458017.1; RP11-204P2.3-001; OTTHUMT00000042392.1; NONHSAT115146
Alternative gene names: XLOC_005474; linc-TNFAIP3-6; ENSG00000235399.1; RP11-204P2.3; OTTHUMG00000015653.1; AL135902.1; AL135902.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.2274 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35D3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC35D3-1:1
3.1 lnc-SLC35D3-1:1
4.0 lnc-SLC35D3-1:1
4.1 lnc-SLC35D3-1:1
5.0 lnc-SLC35D3-1:1
5.1 lnc-TBPL1-56:1
5.2 lnc-SLC35D3-1:1