Transcript: lnc-SLC35F5-21:1

Basic information

LNCipedia transcript ID: lnc-SLC35F5-21:1 
LNCipedia gene ID: lnc-SLC35F5-21
Location (hg19): chr2:115618096-115635390
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 729 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002tld_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.4839 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC35F5-21:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC35F5-21:1
4.0 lnc-SLC35F5-21:1
4.1 lnc-SLC35F5-21:1
5.0 lnc-SLC35F5-21:1
5.1 lnc-EN1-21:1
5.2 lnc-SLC35F5-21:1