Transcript: lnc-SLC37A4-1:38

Basic information

LNCipedia transcript ID: lnc-SLC37A4-1:38 
LNCipedia gene ID: lnc-SLC37A4-1
Location (hg19): chr11:118895066-118899744
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2626 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000526275.1; SLC37A4-010; OTTHUMT00000389665.1
Alternative gene names: ENSG00000137700.10; SLC37A4; OTTHUMG00000166352.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2763.2951 coding 
CPAT coding probability 99.81% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC37A4-1:38 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RPS25-1:18
4.0 lnc-RPS25-1:18
4.1 lnc-RPS25-1:18
5.0 lnc-RPS25-1:18
5.1 lnc-SLC37A4-1:18
5.2 lnc-SLC37A4-1:38