Transcript: lnc-SLC38A2-1:16

Basic information

LNCipedia transcript ID: lnc-SLC38A2-1:16 
LNCipedia gene ID: lnc-SLC38A2-1
Location (hg19): chr12:46773661-46888252
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2633 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257496.1|MICT00000077406.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.5552 non-coding 
CPAT coding probability 10.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A2-1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC38A2-1:16
5.0 lnc-SLC38A2-1:16
5.1 lnc-RPAP3-13:6
5.2 lnc-SLC38A2-1:16