Transcript: lnc-SLC38A2-1:3

Basic information

LNCipedia transcript ID: lnc-SLC38A2-1:3 
LNCipedia gene ID: lnc-SLC38A2-1
Location (hg19): chr12:46778033-46888235
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 674 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021305; NONHSAT027875
Alternative gene names: XLOC_010061; linc-SLC38A2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.843 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC38A2-1:1
3.1 lnc-SLC38A2-1:3
4.0 lnc-SLC38A2-1:3
4.1 lnc-SLC38A2-1:3
5.0 lnc-SLC38A2-1:3
5.1 lnc-RPAP3-13:11
5.2 lnc-SLC38A2-1:3