Transcript: lnc-SLC38A2-1:6

Basic information

LNCipedia transcript ID: lnc-SLC38A2-1:6 
LNCipedia gene ID: lnc-SLC38A2-1
Ensembl Gene ID: ENSG00000257496
Ensembl Transcript ID: ENST00000552634
Location (hg19): chr12:46778016-46780774
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552634.1; RP11-474P2.4-001; OTTHUMT00000404242.1; NONHSAT027874
Alternative gene names: ENSG00000257496.1; RP11-474P2.4; OTTHUMG00000169474.1; AC025031.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.4952 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A2-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A2-1:6
4.0 lnc-SLC38A2-1:6
4.1 lnc-SLC38A2-1:6
5.0 lnc-SLC38A2-1:6
5.1 lnc-RPAP3-13:17
5.2 lnc-SLC38A2-1:6