Transcript: lnc-SLC38A6-1:1

Basic information

LNCipedia transcript ID: lnc-SLC38A6-1:1 
LNCipedia gene ID: lnc-SLC38A6-1
Location (hg19): chr14:61228128-61236361
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1436 bp
Exons: 2
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000510874
Alternative gene names: ENSG00000236622


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.9919 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC38A6-1:1
3.1 lnc-SLC38A6-1:1
4.0 lnc-SLC38A6-1:1
4.1 lnc-SLC38A6-1:1
5.0 lnc-SLC38A6-1:1
5.1 lnc-ACTR10-48:1
5.2 lnc-SLC38A6-1:1