Transcript: lnc-SLC38A8-4:4

Basic information

LNCipedia transcript ID: lnc-SLC38A8-4:4 
LNCipedia gene ID: lnc-SLC38A8-4
Ensembl Gene ID: ENSG00000260788
Ensembl Transcript ID: ENST00000567860
Location (hg19): chr16:83768883-83773626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 745 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567860.1; RP11-298D21.1-004; OTTHUMT00000432941.1; NONHSAT144010
Alternative gene names: ENSG00000260788.1; RP11-298D21.1; OTTHUMG00000176641.1; ENSG00000260788.5; AC009063.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.7482 non-coding 
CPAT coding probability 7.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC38A8-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC38A8-4:4
4.0 lnc-SLC38A8-4:4
4.1 lnc-SLC38A8-4:4
5.0 lnc-SLC38A8-4:4
5.1 lnc-MTHFSD-58:5
5.2 lnc-SLC38A8-4:4