Transcript: lnc-SLC44A3-1:2

Basic information

LNCipedia transcript ID: lnc-SLC44A3-1:2 
LNCipedia gene ID: lnc-SLC44A3-1
Location (hg19): chr1:95392967-95429158
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1847 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001041; NONHSAT004628
Alternative gene names: XLOC_000304; linc-TMEM56-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.5088 non-coding 
CPAT coding probability 13.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-1:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC44A3-1:2
3.1 lnc-SLC44A3-1:2
4.0 lnc-SLC44A3-1:2
4.1 lnc-SLC44A3-1:2
5.0 lnc-SLC44A3-1:2
5.1 lnc-BTBD8-39:12
5.2 lnc-SLC44A3-1:2