Transcript: lnc-SLC44A3-1:23

Basic information

LNCipedia transcript ID: lnc-SLC44A3-1:23 
LNCipedia gene ID: lnc-SLC44A3-1
Location (hg19): chr1:95392952-95428826
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 688 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235501.1|ENST00000452846.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -165.8104 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-1:23 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC44A3-1:23
5.0 lnc-SLC44A3-1:23
5.1 lnc-BTBD8-39:8
5.2 lnc-SLC44A3-1:23