Transcript: lnc-SLC44A3-1:7

Basic information

LNCipedia transcript ID: lnc-SLC44A3-1:7 
LNCipedia gene ID: lnc-SLC44A3-1
Ensembl Gene ID: ENSG00000235501
Ensembl Transcript ID: ENST00000452846
Location (hg19): chr1:95393122-95428826
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 518 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000249; ENST00000452846.1; RP4-639F20.1-002; OTTHUMT00000029698.1; NONHSAT004633; ENST00000452846.5
Alternative gene names: XLOC_000304; linc-TMEM56-3; ENSG00000235501.1; RP4-639F20.1; OTTHUMG00000010780.2; ENSG00000235501.5; AC105942.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.8104 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-1:7 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC44A3-1:7
3.1 lnc-SLC44A3-1:7
4.0 lnc-SLC44A3-1:7
4.1 lnc-SLC44A3-1:7
5.0 lnc-SLC44A3-1:7
5.1 lnc-BTBD8-39:19
5.2 lnc-SLC44A3-1:7