Transcript: lnc-SLC44A3-2:2

Basic information

LNCipedia transcript ID: lnc-SLC44A3-2:2 
LNCipedia gene ID: lnc-SLC44A3-2
Location (hg19): chr1:95148857-95153875
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 747 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002094; NONHSAT004616
Alternative gene names: XLOC_000303; linc-SLC44A3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.4449 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC44A3-2:2 no no no no

Available literature

  1. Shi (2015), Circulating lncRNAs associated with occurrence of colorectal cancer progression., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC44A3-2:2
3.1 lnc-SLC44A3-2:2
4.0 lnc-SLC44A3-2:2
4.1 lnc-SLC44A3-2:2
5.0 lnc-SLC44A3-2:2
5.1 lnc-BTBD8-37:3
5.2 lnc-SLC44A3-2:2