Transcript: lnc-SLC45A1-1:4

Basic information

LNCipedia transcript ID: lnc-SLC45A1-1:4 
LNCipedia gene ID: lnc-SLC45A1-1
RefSeq ID: NR_125999
Location (hg19): chr1:8484705-8495076
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 694 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125999; NR_125999.1
Alternative gene names: LOC102724552


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -116.4083 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC45A1-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC45A1-1:4
4.0 lnc-SLC45A1-1:4
4.1 lnc-SLC45A1-1:4
5.0 lnc-SLC45A1-1:4
5.1 lnc-VAMP3-1:6
5.2 lnc-SLC45A1-1:4