Transcript: lnc-SLC45A1-1:6

Basic information

LNCipedia transcript ID: lnc-SLC45A1-1:6 
LNCipedia gene ID: lnc-SLC45A1-1
Location (hg19): chr1:8483518-8495071
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3619 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232912.1|FTMT20300105014.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.8834 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC45A1-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC45A1-1:6
5.0 lnc-SLC45A1-1:6
5.1 lnc-VAMP3-1:3
5.2 lnc-SLC45A1-1:6