Transcript: lnc-SLC4A10-7:2

Basic information

LNCipedia transcript ID: lnc-SLC4A10-7:2 
LNCipedia gene ID: lnc-SLC4A10-7
Ensembl Gene ID: ENSG00000236841
Ensembl Transcript ID: ENST00000609668
Location (hg19): chr2:163016272-163026208
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 632 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609668.1; ENST00000609668.5
Alternative gene names: ENSG00000236841.3; AC007750.5; ENSG00000236841.7; AC007750.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -205.4619 non-coding 
CPAT coding probability 4.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC4A10-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GCA-1:3
4.0 lnc-SLC4A10-7:2
4.1 lnc-SLC4A10-7:2
5.0 lnc-SLC4A10-7:2
5.1 lnc-TBR1-10:4
5.2 lnc-SLC4A10-7:2