Transcript: lnc-SLC4A3-2:4

Basic information

LNCipedia transcript ID: lnc-SLC4A3-2:4 
LNCipedia gene ID: lnc-SLC4A3-2
Location (hg19): chr2:220594831-220602610
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 510 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT077069; FPKM1_group_18346_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.9517 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC4A3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC4A3-2:4
4.0 lnc-SLC4A3-2:4
4.1 lnc-SLC4A3-2:4
5.0 lnc-SLC4A3-2:4
5.1 lnc-MOGAT1-46:11
5.2 lnc-SLC4A3-2:4