Transcript: lnc-SLC5A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC5A1-1:1 
LNCipedia gene ID: lnc-SLC5A1-1
Location (hg19): chr22:32528388-32539165
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000446078.1; RP1-127L4.7-002; OTTHUMT00000329160.1
Alternative gene names: ENSG00000239674.1; RP1-127L4.7; OTTHUMG00000073689.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC5A1-1:1
4.0 lnc-SLC5A1-1:1
4.1 lnc-SLC5A1-1:1
5.0 lnc-SLC5A1-1:1
5.1 lnc-SFI1-14:3
5.2 lnc-SLC5A1-1:1