Transcript: lnc-SLC5A10-3:1

Basic information

LNCipedia transcript ID: lnc-SLC5A10-3:1 
LNCipedia gene ID: lnc-SLC5A10-3
Location (hg19): chr17:18965225-18965807
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000577988.1; SNORD3B-1-001; OTTHUMT00000441859.2; NONHSAT146422
Alternative gene names: ENSG00000265185.1; SNORD3B-1; OTTHUMG00000178499.1; ENSG00000265185.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5128 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC5A10-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.1.1-1:1
4.0 lnc-AC007952.1.1-3:1
4.1 lnc-AC007952.1.1-3:1
5.0 lnc-AC007952.1.1-3:1
5.1 lnc-GLP2R-144:1
5.2 lnc-SLC5A10-3:1