Transcript: lnc-SLC6A11-1:1

Basic information

LNCipedia transcript ID: lnc-SLC6A11-1:1 
LNCipedia gene ID: lnc-SLC6A11-1
Ensembl Gene ID: ENSG00000230599
Ensembl Transcript ID: ENST00000440266
Location (hg19): chr3:10809149-10813403
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005494; ENST00000440266; ENST00000440266.2; AC018495.3-001; OTTHUMT00000340197.2; NONHSAT087958
Alternative gene names: XLOC_002575; linc-SLC6A11; ENSG00000230599; AC018495.3; ENSG00000230599.2; OTTHUMG00000155454.2; AC018495.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -294.2339 non-coding 
CPAT coding probability 5.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A11-1:1
3.1 lnc-SLC6A11-1:1
4.0 lnc-SLC6A11-1:1
4.1 lnc-SLC6A11-1:1
5.0 lnc-SLC6A11-1:1
5.1 lnc-TATDN2-1:14
5.2 lnc-SLC6A11-1:1