Transcript: lnc-SLC6A17-2:1

Basic information

LNCipedia transcript ID: lnc-SLC6A17-2:1 
LNCipedia gene ID: lnc-SLC6A17-2
Location (hg19): chr1:110688583-110689352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 770 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr1_13647_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -94.0823 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A17-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC6A17-2:1
4.0 lnc-SLC6A17-2:1
4.1 lnc-SLC6A17-2:1
5.0 lnc-SLC6A17-2:1
5.1 lnc-KCNC4-6:1
5.2 lnc-SLC6A17-2:1