Transcript: lnc-SLC6A9-2:15

Basic information

LNCipedia transcript ID: lnc-SLC6A9-2:15 
LNCipedia gene ID: lnc-SLC6A9-2
Location (hg19): chr1:44404330-44406129
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 364 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002373; NONHSAT002828
Alternative gene names: XLOC_000811; linc-HYI-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.561 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC6A9-2:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC6A9-3:1
3.1 lnc-SLC6A9-3:1
4.0 lnc-SLC6A9-3:1
4.1 lnc-SLC6A9-2:15
5.0 lnc-SLC6A9-2:15
5.1 lnc-C1orf210-9:15
5.2 lnc-SLC6A9-2:15