Transcript: lnc-SLC7A13-1:1

Basic information

LNCipedia transcript ID: lnc-SLC7A13-1:1 
LNCipedia gene ID: lnc-SLC7A13-1
Ensembl Gene ID: ENSG00000254231
Ensembl Transcript ID: ENST00000521326
Location (hg19): chr8:87345503-87355543
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1486 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521326; ENST00000521326.1; CTD-2284J15.1-001; OTTHUMT00000374753.1; NONHSAT127550
Alternative gene names: ENSG00000254231; CTD-2284J15.1; ENSG00000254231.1; OTTHUMG00000163689.1; AC103760.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.6917 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A13-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC7A13-1:1
3.1 lnc-SLC7A13-1:1
4.0 lnc-SLC7A13-1:1
4.1 lnc-SLC7A13-1:1
5.0 lnc-SLC7A13-1:1
5.1 lnc-ZNF706-236:1
5.2 lnc-SLC7A13-1:1