Transcript: lnc-SLC7A14-3:7

Basic information

LNCipedia transcript ID: lnc-SLC7A14-3:7 
LNCipedia gene ID: lnc-SLC7A14-3
Ensembl Gene ID: ENSG00000239739
Ensembl Transcript ID: ENST00000473110
Location (hg19): chr3:170458140-170459154
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 263 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000473110; ENST00000473110.1; RP11-373E16.4-001; OTTHUMT00000352585.1; NONHSAT093210
Alternative gene names: ENSG00000239739; RP11-373E16.4; ENSG00000239739.1; OTTHUMG00000158937.1; AC026316.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -330.0055 non-coding 
CPAT coding probability 2.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A14-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RPL22L1-1:1
3.1 lnc-RPL22L1-1:1
4.0 lnc-RPL22L1-1:1
4.1 lnc-SLC7A14-3:7
5.0 lnc-SLC7A14-3:7
5.1 lnc-TBL1XR1-48:6
5.2 lnc-SLC7A14-3:7