Transcript: lnc-SLC7A6OS-1:1

Basic information

LNCipedia transcript ID: lnc-SLC7A6OS-1:1 
LNCipedia gene ID: lnc-SLC7A6OS-1
Ensembl Gene ID: ENSG00000261469
Ensembl Transcript ID: ENST00000564147
Location (hg19): chr16:68270748-68271570
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 533 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564147.1; RP11-96D1.6-001; OTTHUMT00000433108.1; NONHSAT143231
Alternative gene names: ENSG00000261469.1; RP11-96D1.6; OTTHUMG00000176679.1; AC020978.5; AC020978.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.1933 non-coding 
CPAT coding probability 6.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A6OS-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC7A6OS-1:1
4.0 lnc-SLC7A6OS-1:1
4.1 lnc-SLC7A6OS-1:1
5.0 lnc-SLC7A6OS-1:1
5.1 lnc-SLC12A4-7:1
5.2 lnc-SLC7A6OS-1:1