Transcript: lnc-SLC7A7-1:4

Basic information

LNCipedia transcript ID: lnc-SLC7A7-1:4 
LNCipedia gene ID: lnc-SLC7A7-1
Ensembl Gene ID: ENSG00000258458
Ensembl Transcript ID: ENST00000554730
Location (hg19): chr14:23233594-23235739
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 380 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554730.1; CTD-2555K7.2-004; OTTHUMT00000411112.1; NONHSAT035807
Alternative gene names: ENSG00000258458.1; CTD-2555K7.2; OTTHUMG00000170992.1; ENSG00000258458.5; AL160314.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC7A7-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC7A7-1:4
4.0 lnc-SLC7A7-1:4
4.1 lnc-SLC7A7-1:4
5.0 lnc-SLC7A7-1:4
5.1 lnc-EFS-29:12
5.2 lnc-SLC7A7-1:4