Transcript: lnc-SLC9A3-1:2

Basic information

LNCipedia transcript ID: lnc-SLC9A3-1:2 
LNCipedia gene ID: lnc-SLC9A3-1
Ensembl Gene ID: ENSG00000188242
Ensembl Transcript ID: ENST00000342584
Location (hg19): chr5:470625-473213
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1876 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000342584.3
Alternative gene names: ENSG00000188242.4; PP7080; AC010442.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -58.5193 non-coding 
CPAT coding probability 24.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC9A3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CTD-2228K2.5.1-1:5
4.1 lnc-CTD-2228K2.5.1-1:5
5.0 lnc-CTD-2228K2.5.1-1:5
5.1 lnc-IRX2-48:1
5.2 lnc-SLC9A3-1:2