Transcript: lnc-SLCO5A1-11:2

Basic information

LNCipedia transcript ID: lnc-SLCO5A1-11:2 
LNCipedia gene ID: lnc-SLCO5A1-11
Location (hg19): chr8:69887118-69887506
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 386 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_31492_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.5244 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLCO5A1-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-664D7.4.1-7:2
4.0 lnc-RP11-664D7.4.1-7:2
4.1 lnc-RP11-664D7.4.1-7:2
5.0 lnc-RP11-664D7.4.1-7:2
5.1 lnc-CPA6-20:2
5.2 lnc-SLCO5A1-11:2