Transcript: lnc-SLITRK5-18:1

Basic information

LNCipedia transcript ID: lnc-SLITRK5-18:1 
LNCipedia gene ID: lnc-SLITRK5-18
Location (hg19): chr13:89001068-89003744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1999 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_896_chr13:89001067-89003744_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4106 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLITRK5-18:1
4.0 lnc-SLITRK5-18:1
4.1 lnc-SLITRK5-18:1
5.0 lnc-SLITRK5-18:1
5.1 lnc-COL4A2-164:1
5.2 lnc-SLITRK5-18:1