Transcript: lnc-SLITRK5-5:1

Basic information

LNCipedia transcript ID: lnc-SLITRK5-5:1 
LNCipedia gene ID: lnc-SLITRK5-5
Ensembl Gene ID: ENSG00000231019
Ensembl Transcript ID: ENST00000430214
RefSeq ID: NR_131919
Location (hg19): chr13:88795122-88888337
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 561 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000430214; ENST00000430214.1; RP11-545P6.2-001; OTTHUMT00000339346.2; NONHSAT034608; NR_131919.1
Alternative gene names: ENSG00000231019; RP11-545P6.2; ENSG00000231019.1; OTTHUMG00000155300.2; AL354896.1; LOC105370306


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.4272 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLITRK5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-5:1
3.1 lnc-SLITRK5-5:1
4.0 lnc-SLITRK5-5:1
4.1 lnc-SLITRK5-5:1
5.0 lnc-SLITRK5-5:1
5.1 lnc-COL4A2-165:1
5.2 lnc-SLITRK5-5:1