Transcript: lnc-SLX1B-3:22

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:22 
LNCipedia gene ID: lnc-SLX1B-3
Location (hg19): chr16:29271243-29381136
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4290 bp
Exons: 10
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000198106.7|ENCT00000157842.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1289.4326 coding 
CPAT coding probability 99.68% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLX1B-3:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SNX29P2-3:8
5.0 lnc-SNX29P2-3:8
5.1 lnc-QPRT-14:19
5.2 lnc-SLX1B-3:22