Transcript: lnc-SLX1B-3:6

Basic information

LNCipedia transcript ID: lnc-SLX1B-3:6 
LNCipedia gene ID: lnc-SLX1B-3
Ensembl Gene ID: ENSG00000103472
Ensembl Transcript ID: ENST00000427965
Location (hg19): chr16:29086340-29127519
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1618 bp
Exons: 15
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427965.6
Alternative gene names: ENSG00000103472.10; RRN3P2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1216.5486 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLX1B-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-QPRT-14:2
5.1 lnc-QPRT-14:2
5.2 lnc-SLX1B-3:6