Transcript: lnc-SLX4IP-39:5

Basic information

LNCipedia transcript ID: lnc-SLX4IP-39:5 
LNCipedia gene ID: lnc-SLX4IP-39
Location (hg19): chr20:11137821-11253738
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2653 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000052564.1|MICT00000213710.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -54.0141 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLX4IP-39:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C20orf187-4:5
5.0 lnc-C20orf187-4:5
5.1 lnc-SLX4IP-14:5
5.2 lnc-SLX4IP-39:5